C9orf72 hexanucleotide repeat expansions impair microglial response in models of ALS

Cell information vs gene expression on reduced dimensions

In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.

Cell information to subset:

Cell information

Gene expression

Gene name:

Colour:

White-Red

Blue-Yellow-Red

Yellow-Green-Purple

Plot order:

Max-1st Min-1st Original Random

Cell information / gene expression box plot / violin plot

In this tab, users can visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).
Y-axis is on a log10 scale.
The black dot inside the violin plots is the median.

Cell information (X-axis):

Gene name (Y-axis):

Plot type:

boxplot violin

Show data points

Cell information to subset:

Coexpression of two genes on reduced dimensions

In this tab, users can visualise the coexpression of two genes on low-dimensional representions.

Gene Expression

Gene 1:

Gene 2:

Colour:

Red (Gene1); Blue (Gene2)

Orange (Gene1); Blue (Gene2)

Red (Gene1); Green (Gene2)

Green (Gene1); Blue (Gene2)

Plot order:

Max-1st Min-1st Original Random

Cell information to subset:

Cell numbers

Gene expression heatmap / bubbleplot

In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).
The normalised expression are averaged, log-transformed and then plotted.

List of gene names
(Max 50 genes, separated
by , or ; or newline):

Group by:

Plot type:

Heatmap Bubbleplot

Scale gene expression

Cluster rows (genes)

Cluster columns (samples)

Cell information to subset:

Colour scheme:

White-Red

Blue-Yellow-Red

Yellow-Green-Purple

This webpage was made by Tim Meese adapting and using the code of ShinyCell