C9orf72 hexanucleotide repeat expansions impair microglial response in models of ALS

C9orf72 hexanucleotide repeat expansions impair microglial response in models of ALS - Microglia

Cell information vs gene expression on reduced dimensions

In this tab, users can visualise both cell information and gene expression side-by-side on low-dimensional representions.

Cell information to subset:

Cell information

Gene expression

Gene name:

Colour:

White-Red

Blue-Yellow-Red

Yellow-Green-Purple

Plot order:

Max-1st Min-1st Original Random

Cell information / gene expression box plot / violin plot

In this tab, users can visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).
Y-axis is on a log10 scale.
The black dot inside the violin plots is the median.

Cell information (X-axis):

Gene name (Y-axis):

Plot type:

boxplot violin

Show data points

Cell information to subset:

This webpage was made by Tim Meese adapting and using the code of ShinyCell