C9orf72 hexanucleotide repeat expansions impair microglial response in models of ALS - Astrocytes
Cell information vs gene expression on reduced dimensions
In this tab, users can visualise both cell information and gene
expression side-by-side on low-dimensional representions.
Cell information
Gene expression
Cell information
Gene expression
Cell information / gene expression box plot / violin plot
In this tab, users can visualise the gene expression or continuous cell information
(e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).
Y-axis is on a log10 scale.
The black dot inside the violin plots is the median.
Coexpression of two genes on reduced dimensions
In this tab, users can visualise the coexpression of two genes
on low-dimensional representions.
Gene Expression
Cell numbers
Gene Expression
Cell numbers
Gene expression heatmap / bubbleplot
In this tab, users can visualise the gene expression patterns of
multiple genes grouped by categorical cell information (e.g. library / cluster).
The normalised expression are averaged, log-transformed and then plotted.
This webpage was made by Tim Meese adapting and using the code of ShinyCell